MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2724223350553349
cnr4.732856686791631
efc0.5814632882187206
fber109.86537170410156
fwhmavg3.8503899999999995
fwhmx3.73128
fwhmy4.0923
fwhmz3.72759
icvscsf0.20424798739028957
icvsgm0.4615979580131284
icvswm0.33415405459658204
inumed0.9766010046005249
inurange0.2818305402994158
qi10.0
qi20.001469807622817368
rpvecsf22.98211678975719
rpvegm11.46497929494085
rpvewm18.59329210328777
sizex180
sizey256
sizez256
snrcsf2.8374204250877995
snrgm10.558357416202186
snrtotal11.513304140286566
snrwm21.144134579569716
snrdcsf16.306600017442243
snrdgm30.37949599977327
snrdtotal31.590468481187298
snrdwm48.08530942634638
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.5211495849368886
summarybgmad13.624549865722656
summarybgmean49.83246994018555
summarybgmedian47.8104362487793
summarybgn2875368.0
summarybgp0529.280004215240478
summarybgp9577.29500312805175
summarybgstdv15.352051734924316
summarycsfk3.583556132836649
summarycsfmad125.9216079711914
summarycsfmean329.7804870605469
summarycsfmedian339.120361328125
summarycsfn12634.0
summarycsfp05131.0475196838379
summarycsfp95504.0231781005858
summarycsfstdv119.51240539550781
summarygmk0.23705210101340235
summarygmmad57.537391662597656
summarygmmean633.0274047851562
summarygmmedian631.7874755859375
summarygmn45234.0
summarygmp05534.9226684570312
summarygmp95733.9165710449219
summarygmstdv59.837005615234375
summarywmk0.8641903240028377
summarywmmad42.773719787597656
summarywmmean998.148193359375
summarywmmedian1000.006591796875
summarywmn185868.0
summarywmp05916.2882507324218
summarywmp951072.1559143066406
summarywmstdv47.29462432861328
tpmoverlapcsf0.20519588887691498
tpmoverlapgm0.5318025350570679
tpmoverlapwm0.5410726070404053
wm2max0.6032618308371216

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumdff0f95778bb2dfa11489f6fca73fa47
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.