MRIQC: individual T1w report

Summary

Subject ID: 012_ExercisePre.
Date and time: 2018-05-06, 20:56.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2724223350553349
cnr			4.732856686791631
efc			0.5814632882187206
fber			109.86537170410156
fwhm	avg		3.8503899999999995
fwhm	x		3.73128
fwhm	y		4.0923
fwhm	z		3.72759
icvs	csf		0.20424798739028957
icvs	gm		0.4615979580131284
icvs	wm		0.33415405459658204
inu	med		0.9766010046005249
inu	range		0.2818305402994158
qi	1		0.0
qi	2		0.001469807622817368
rpve	csf		22.98211678975719
rpve	gm		11.46497929494085
rpve	wm		18.59329210328777
size	x		180
size	y		256
size	z		256
snr	csf		2.8374204250877995
snr	gm		10.558357416202186
snr	total		11.513304140286566
snr	wm		21.144134579569716
snrd	csf		16.306600017442243
snrd	gm		30.37949599977327
snrd	total		31.590468481187298
snrd	wm		48.08530942634638
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.5211495849368886
summary	bg	mad	13.624549865722656
summary	bg	mean	49.83246994018555
summary	bg	median	47.8104362487793
summary	bg	n	2875368.0
summary	bg	p05	29.280004215240478
summary	bg	p95	77.29500312805175
summary	bg	stdv	15.352051734924316
summary	csf	k	3.583556132836649
summary	csf	mad	125.9216079711914
summary	csf	mean	329.7804870605469
summary	csf	median	339.120361328125
summary	csf	n	12634.0
summary	csf	p05	131.0475196838379
summary	csf	p95	504.0231781005858
summary	csf	stdv	119.51240539550781
summary	gm	k	0.23705210101340235
summary	gm	mad	57.537391662597656
summary	gm	mean	633.0274047851562
summary	gm	median	631.7874755859375
summary	gm	n	45234.0
summary	gm	p05	534.9226684570312
summary	gm	p95	733.9165710449219
summary	gm	stdv	59.837005615234375
summary	wm	k	0.8641903240028377
summary	wm	mad	42.773719787597656
summary	wm	mean	998.148193359375
summary	wm	median	1000.006591796875
summary	wm	n	185868.0
summary	wm	p05	916.2882507324218
summary	wm	p95	1072.1559143066406
summary	wm	stdv	47.29462432861328
tpm	overlap	csf	0.20519588887691498
tpm	overlap	gm	0.5318025350570679
tpm	overlap	wm	0.5410726070404053
wm2max			0.6032618308371216

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	dff0f95778bb2dfa11489f6fca73fa47
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.